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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12814632_12830998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12814632 - 12830998
Intron Length:
16367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTACTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TATGCATTAAAA
Flanking Amino Acid:
VYVWETIVFFSLAASKEAEA
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
67.4
0.39
0.9
60.9
34.1
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
59
0.28
1.8
71.45
39.9

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007387
12814576 - 12849813
35238