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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12841909_12843485_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12841909 - 12843485
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
CTGCTTGGCACT
Flanking Amino Acid:
SRNGNVLYSIRITLTLACPM
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
50
0
1.5
63.1
44.5
Major PPT
78.6
0.64
0.7
76.4
25.7
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
37
-0.9
2.2
52.75
42.9

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007387
12814576 - 12849813
35238
ENSAPLT00000023302
12814943 - 12850603
35661