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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12844678_12845182_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12844678 - 12845182
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCGTCATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTTACC
Flanking Amino Acid:
LRYCTKHYNTGKFTCIEARF
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84.4
33.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.2
0.5
0.9
68.9
36
Minor 5ss
33.8
-1.8
2.6
44.2
43
Minor BPS
60.2
0.3
2
77.31
38.1

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023302
12814943 - 12850603
35661
ENSAPLT00000007387
12814576 - 12849813
35238