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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12845398_12845604_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12845398 - 12845604
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GACTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCCTCTGACT
Flanking Amino Acid:
SSGSRASLPKVSYVKAIDIW
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
66.7
0.38
0.9
58
38.1
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
51.2
0.12
1.7
69.1
42.1

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007387
12814576 - 12849813
35238
ENSAPLT00000023302
12814943 - 12850603
35661