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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12845752_12849498_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12845752 - 12849498
Intron Length:
3747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTAAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCATTTTAAGT
Flanking Amino Acid:
RFRRKRRHHKSPMLNLFQED
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
68.9
0.43
1
67.3
37.9
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
53
0.17
1.7
67.12
44.4

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007387
12814576 - 12849813
35238