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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12849810_12850524_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12849810 - 12850524
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGGGAA
5'SS Class:
major
3'SS Sequence:
TCACCCCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TGTCTCTCACCC
Flanking Amino Acid:
KIVRREDVHNQEHPMGNSRR
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1
59.4
35.1
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
66
0.36
0.9
63.5
32.5
Minor 5ss
25.3
-2.8
3.4
33.7
43
Minor BPS
49.7
-0
1.8
64.67
40.6

Associated Gene:

Gene:
GLRA1
Ensembl Gene ID:
ENSAPLG00000007106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023302
12814943 - 12850603
35661