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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12870469_12871262_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12870469 - 12871262
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTCAATTGAATC
Flanking Amino Acid:
FMQTFVLAPEGSVANKFYVH
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
78.8
0.65
0.8
70.5
36.2
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
49.2
-0
1.6
60.75
38.7

Associated Gene:

Gene:
G3BP1
Ensembl Gene ID:
ENSAPLG00000006581
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028674
12865126 - 12873242
8117
ENSAPLT00000006879
12865417 - 12885287
19871