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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12871869_12873105_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12871869 - 12873105
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TGTTACACAACA
Flanking Amino Acid:
LLNQAPDYLHRFYGKNSSYV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
51.4
0.04
2
71.21
40

Associated Gene:

Gene:
G3BP1
Ensembl Gene ID:
ENSAPLG00000006581
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006879
12865417 - 12885287
19871
ENSAPLT00000028674
12865126 - 12873242
8117