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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12892866_12894229_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12892866 - 12894229
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAA
U12 Branch Point Sequence:
CTGCTTCTAGCT
Flanking Amino Acid:
AVTRVLHRLGGVQFDIDLPN
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74.1
38.4
Major BPS
52.9
0.07
1.1
59.3
35.9
Major PPT
81.6
0.71
0.7
77
25
Minor 5ss
28.1
-2.5
2.7
32.6
42
Minor BPS
45
-0.3
1.8
61.19
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017300
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043649
12891691 - 12896617
4927