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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12894368_12895617_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
12894368 - 12895617
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAGGA
5'SS Class:
major
3'SS Sequence:
TTATTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
60.5
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.5
0.82
0.8
81.9
34.1
Minor 5ss
36
-1.6
3.3
44.1
45.6
Minor BPS
74.3
0.84
1.3
87.25
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017300
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043649
12891691 - 12896617
4927