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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12913760_12914342_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12913760 - 12914342
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
CACCCCGGCACA
Flanking Amino Acid:
CLAGKALAAPEPVGANPVQV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
43.2
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
30.2
-2.3
2.6
34.3
41.4
Minor BPS
38.7
-0.9
2.3
46.47
42.9

Associated Gene:

Gene:
SPARC
Ensembl Gene ID:
ENSAPLG00000006120
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006368
12913690 - 12916629
2940