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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12916523_12916679_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12916523 - 12916679
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTTCCTTCCACA
Flanking Amino Acid:
EWASCFGIKEQDIDKDLVI*
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
72.2
39.5
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
35.8
-1.6
2.8
41.3
38.3
Minor BPS
54
0.12
2
73.01
38.9

Associated Gene:

Gene:
SPARC
Ensembl Gene ID:
ENSAPLG00000006120
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021338
12913690 - 12917317
3628