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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12963976_12966152_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12963976 - 12966152
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
GPSQVWFNITGGDDDMDFDI
Intron Amino Acid Position:
1308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
86.9
0.83
0.7
85
28.1
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
FAT2
Ensembl Gene ID:
ENSAPLG00000005340
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005534
12946604 - 12996969
50366