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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12968587_12969576_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12968587 - 12969576
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTCTTTACTT
Flanking Amino Acid:
NAEIHYSLQAGNGEGFFSID
Intron Amino Acid Position:
1513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
100
1.24
0.5
100
0
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
63.8
0.51
1.6
76.34
41.1

Associated Gene:

Gene:
FAT2
Ensembl Gene ID:
ENSAPLG00000005340
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005534
12946604 - 12996969
50366