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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12980852_12981484_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12980852 - 12981484
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGATTA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCCTAG
U12 Branch Point Sequence:
TTTCTTCTGACA
Flanking Amino Acid:
DAAVGEIILTVSADDLDGAM
Intron Amino Acid Position:
3261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
70.8
35.7
Major BPS
40.9
-0.5
1.7
38.2
43.3
Major PPT
82.8
0.74
0.9
80.1
32
Minor 5ss
48.1
-0.2
2.8
65.2
46
Minor BPS
55.8
0.18
1.6
72.08
33.2

Associated Gene:

Gene:
FAT2
Ensembl Gene ID:
ENSAPLG00000005340
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005534
12946604 - 12996969
50366