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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13000318_13008245_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13000318 - 13008245
Intron Length:
7928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CCTCGCTGACCC
Flanking Amino Acid:
ASITLNLPNCWRAGHPHPAP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
67.8
0.44
1
75
30.1
Major PPT
77.2
0.61
0.8
69.1
37
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.2
-0.5
2.1
52.11
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004805
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040597
12998843 - 13012816
13974