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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13004059_13008245_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13004059 - 13008245
Intron Length:
4187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TGAATCTCACTG
Flanking Amino Acid:
ASITLNLPNCWLYQAVKLLF
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
85.4
0.8
0.8
80.1
31.9
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.6
-0.6
1.8
45.62
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004805
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004975
12999052 - 13012816
13765