Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13011604_13011817_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13011604 - 13011817

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCCGGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAGTGAT

U12 Branch Point Sequence:

CTGAAGTGATGC

Flanking Amino Acid:

LVKCAHHFCYRFQKQFVDYG

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

64.7

0.36

1.2

55.1

42.1

Major PPT

58.6

0.19

1.1

41.4

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

30.9

-1.4

2.2

36.37

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040597

12998843 - 13012816

13974

ENSAPLT00000017339

13009650 - 13021388

11739

ENSAPLT00000004975

12999052 - 13012816

13765