Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13011907_13012164_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13011907 - 13012164

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

TGTTCCCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCAGAG

U12 Branch Point Sequence:

TGTTCCCCCACA

Flanking Amino Acid:

PLALKNAGILLGPLSLLVMG

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

62.2

43.7

Major BPS

43.1

-0.4

1.5

40.4

42.3

Major PPT

76.2

0.59

0.8

69.5

31.3

Minor 5ss

30.2

-2.3

3.2

35.3

42.3

Minor BPS

48.4

-0.1

2.3

69.53

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040597

12998843 - 13012816

13974

ENSAPLT00000017339

13009650 - 13021388

11739

ENSAPLT00000004975

12999052 - 13012816

13765