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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13017533_13017622_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13017533 - 13017622
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CCTGTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTGATACACC
Flanking Amino Acid:
GIPCHCPFKAGSYSLPASDF
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54
41.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
74.7
0.56
0.8
68.8
31.7
Minor 5ss
31.4
-2.1
3.5
43.4
43.9
Minor BPS
38.8
-0.8
2.5
51.59
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004805
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017339
13009650 - 13021388
11739