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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13017806_13018374_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13017806 - 13018374
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGCAC
U12 Branch Point Sequence:
TGGTGCCGGACA
Flanking Amino Acid:
GNKPMASPLKTVLVVEKALG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
48.9
-0
1.5
63.1
44.5
Major PPT
88
0.85
0.7
80.3
31.8
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
43.4
-0.5
2.2
56.77
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004805
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017339
13009650 - 13021388
11739