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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13018528_13020575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13018528 - 13020575
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCGGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GGGATCTGACTC
Flanking Amino Acid:
ERSGSRRLSKVGGFSWENCG
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
64.7
0.33
1
56.6
38.8
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
43
-0.5
1.6
44.99
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004805
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017339
13009650 - 13021388
11739