About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13039145_13039316_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13039145 - 13039316
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
CCTCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCCTCTTCATCC
Flanking Amino Acid:
CQAYKSLYGKDLIADLKYEL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.3
0.64
0.7
69.1
31.5
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
50.6
-0
1.8
61.83
44.1

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276