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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13039431_13039514_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13039431 - 13039514
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TCTCTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CATCCCGCAGCT
Flanking Amino Acid:
DAKEIKDAIGGLGTDEKCLI
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
75
0.56
0.8
68.4
32
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
43
-0.4
2.3
63.11
46.4

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276