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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13039606_13039703_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13039606 - 13039703
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
CCTCTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TCCTCTTCCACC
Flanking Amino Acid:
IHDLVAAYKDAYERDLEADI
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
73.3
0.53
0.9
66.4
34.4
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
49.3
-0
2
61.68
44.3

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269