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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13039784_13039859_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13039784 - 13039859
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CAGGGCTGAGCC
Flanking Amino Acid:
FKKMLVVLLQGAREEDDVVS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
65.3
0.34
0.9
57.1
38.8
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
40
-0.7
2
43.92
43.8

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269