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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13040153_13040382_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13040153 - 13040382
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TCCCCTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
GGGCTCAGAGGC
Flanking Amino Acid:
GRRSKQHLRMVFNEYLKISG
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
74.2
0.55
0.7
68.7
25
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
33.9
-1.2
1.7
35.12
33.5

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276