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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13042555_13042933_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13042555 - 13042933
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTGCTG
5'SS Class:
weak_major
3'SS Sequence:
AATGCCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
AACACCCGAATG
Flanking Amino Acid:
IKAYKAHYGRDLMADLKSEL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
48.2
47.5
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
74.1
0.54
0.9
66.3
39.7
Minor 5ss
32.9
-1.9
3.5
38.5
46.5
Minor BPS
44.4
-0.5
1.8
45.78
40.3

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269