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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13043048_13043306_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13043048 - 13043306
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
ACCCCCATATCC
Flanking Amino Acid:
DAKQLRKAVEGAGTDESVLI
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
69.7
41.3
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
38.5
-1.3
3.1
50.4
46
Minor BPS
46.9
-0.2
1.9
55.12
42.8

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000026471
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000018034
13036861 - 13144314
107454
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000048433
13034043 - 13046311
12269