About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13043821_13044605_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13043821 - 13044605
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTCTCTCCACC
Flanking Amino Acid:
NLTQAHEDAKVVAETLKLAD
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
73.4
0.53
0.9
66.6
34.3
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
48.8
-0.1
2
63.43
42.2

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276