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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13044624_13045005_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13044624 - 13045005
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCCTCCTCACTG
Flanking Amino Acid:
EDAKVVAETLKLADVSSNDS
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.3
0.64
0.8
69.8
35.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
46.1
-0.4
1.9
46.49
47

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451