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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13045452_13045674_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13045452 - 13045674
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTCAGTGAC
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCCCAC
U12 Branch Point Sequence:
GTGCCCCGAGCC
Flanking Amino Acid:
GDVRDAFVAIVRSVKNKPAF
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
67.1
38.9
Major BPS
45.4
-0.2
1.2
49.9
36.8
Major PPT
78
0.63
0.9
71.9
38
Minor 5ss
28.9
-2.4
3
36.2
40.7
Minor BPS
43.9
-0.4
2
54.98
42.2

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000026471
13034043 - 13046311
12269