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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13045734_13046017_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13045734 - 13046017
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCGAG
U12 Branch Point Sequence:
TTTTTTCGAGCT
Flanking Amino Acid:
FADKLYKSMKGAGTDERTLT
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
64.9
41.2
Major BPS
49.9
-0
1.7
58.2
48.3
Major PPT
85.5
0.8
0.7
80.5
24.8
Minor 5ss
32.7
-2
3.1
40.1
46
Minor BPS
48.9
0
2
77.16
39.3

Associated Gene:

Gene:
ANXA6
Ensembl Gene ID:
ENSAPLG00000003352
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019375
13034043 - 13046318
12276
ENSAPLT00000017384
13034043 - 13046311
12269
ENSAPLT00000003526
13036861 - 13046311
9451
ENSAPLT00000048433
13034043 - 13046311
12269
ENSAPLT00000026471
13034043 - 13046311
12269