Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13060682_13060974_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13060682 - 13060974

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGGC

5'SS Class:

major

3'SS Sequence:

TCCCCTCTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAA

U12 Branch Point Sequence:

TCCCCTCTCACA

Flanking Amino Acid:

SALEELVGSGAAGPKPSSTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

65.2

40.3

Major BPS

55.5

0.14

1.3

66.7

39.7

Major PPT

77.1

0.61

0.7

71.2

26.8

Minor 5ss

29.4

-2.4

3.5

41.3

45.4

Minor BPS

45.7

-0.3

56.78

42.8

Associated Gene:

Gene:

TNIP1

Ensembl Gene ID:

ENSAPLG00000002442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025819

13059947 - 13070361

10415

ENSAPLT00000002496

13059947 - 13066775

6829