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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13067794_13067889_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13067794 - 13067889
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCCAACCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTCGCCCCAACC
Flanking Amino Acid:
KEQKVYSFLKNSCPPVAEEF
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.4
0.44
0.9
61.1
34.6
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
47.7
-0.2
2
60.33
44.6

Associated Gene:

Gene:
GPX3
Ensembl Gene ID:
ENSAPLG00000002355
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002399
13067587 - 13068191
605