About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13096652_13096934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13096652 - 13096934
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
TGTTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GCTTGTTTAATT
Flanking Amino Acid:
CQTCLLDLEYGLPIQVRDAG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.6
37.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
76.1
0.59
0.9
67.8
42.5
Minor 5ss
30.3
-2.3
2.9
34
35.4
Minor BPS
62.7
0.48
1.8
75.88
41.7

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542