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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13097036_13097221_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13097036 - 13097221
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCTTTTAACT
Flanking Amino Acid:
EYYTQNMEREIANSDGTRPV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.8
0.29
0.9
57.6
37.7
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
75.5
0.88
1.1
85.79
33.8

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542