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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13097395_13097977_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13097395 - 13097977
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACGTA
5'SS Class:
major
3'SS Sequence:
TACTGAACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGAACC
Flanking Amino Acid:
ECKRGEECPYRHEKPTDPDD
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.9
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
60.3
0.23
0.9
56.4
38.7
Minor 5ss
38.2
-1.3
3.7
55.4
48.8
Minor BPS
73.1
0.71
1.6
84.87
33

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542