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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13098179_13098673_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13098179 - 13098673
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCACGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGTTTTTCCACG
Flanking Amino Acid:
LGDTITESDLRNHFYQFGEI
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
67.5
40.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.9
0.72
0.8
78.1
29.5
Minor 5ss
40.2
-1.1
2.7
49.2
47.1
Minor BPS
48
-0.3
2
59.54
42.7

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542