About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13098839_13099313_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13098839 - 13099313
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTCAAAT
Flanking Amino Acid:
NGRRLNVKWGRSQAARGKEK
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.4
0.73
0.7
81.2
30.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
71.4
0.75
1.6
89.47
34.4

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542