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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13099403_13099951_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13099403 - 13099951
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCATAA
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
KLEPVPGLPGALPPPPAAEE
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
52.4
0.06
1.1
49.2
36.2
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
RBM22
Ensembl Gene ID:
ENSAPLG00000016408
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017132
13095362 - 13100903
5542