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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13103683_13105312_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13103683 - 13105312
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTCTCTGTGATG
Flanking Amino Acid:
PSYGEFLSFNRTPTPFDRAV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
83
0.74
0.8
77.6
31.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
47
-0.3
2.1
53.04
43.2

Associated Gene:

Gene:
MYOZ3
Ensembl Gene ID:
ENSAPLG00000016381
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017098
13103520 - 13106856
3337