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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13109661_13111079_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13109661 - 13111079
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGAAA
5'SS Class:
major
3'SS Sequence:
CTGTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GGGCCGCTAACC
Flanking Amino Acid:
STRNAGIEAQDRRTSLPASP
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
72.7
33.3
Major BPS
57.1
0.18
1.1
59
36
Major PPT
75.8
0.58
0.8
66.3
35.8
Minor 5ss
32.2
-2
3
38.5
46.8
Minor BPS
44.1
-0.4
2.3
54.47
42.8

Associated Gene:

Gene:
SYNPO
Ensembl Gene ID:
ENSAPLG00000024895
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048298
13107643 - 13118837
11195
ENSAPLT00000044489
13068334 - 13113083
44750
ENSAPLT00000035612
13068626 - 13113083
44458
ENSAPLT00000033984
13107643 - 13121142
13500