Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13113299_13118440_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13113299 - 13118440

Intron Length:

5142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGGGGG

5'SS Class:

major

3'SS Sequence:

GCTCTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTAAC

U12 Branch Point Sequence:

GCCCCGCTAACC

Flanking Amino Acid:

SGGGTGTGTAGVSRSSSLSE

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.2

51.5

42.6

Major BPS

57.1

0.18

1.1

Major PPT

74.1

0.54

0.8

65.3

36.2

Minor 5ss

26.8

-2.7

3.6

28.2

Minor BPS

-0.4

2.3

53.33

44.1

Associated Gene:

Gene:

SYNPO

Ensembl Gene ID:

ENSAPLG00000024895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048298

13107643 - 13118837

11195