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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13138159_13138326_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13138159 - 13138326
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CCTCCCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
GTCCCGTTAACC
Flanking Amino Acid:
GRKYPEMDSDSRAFLRDYYR
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
79.3
0.66
0.7
72.6
25.5
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
57.3
0.21
2.1
68.75
42.7

Associated Gene:

Gene:
NDST1
Ensembl Gene ID:
ENSAPLG00000016141
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016866
13136221 - 13145140
8920