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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13138159_13138985_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13138159 - 13138985
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CCTCCCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
GTCCCGTTAACC
Flanking Amino Acid:
TNFIDYHKTLAREPSCGTIT
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.4
60.6
44.5
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
79.3
0.66
0.7
72.6
25.5
Minor 5ss
36.4
-1.5
2.8
41.7
37.6
Minor BPS
57.3
0.21
2.1
68.75
42.7

Associated Gene:

Gene:
NDST1
Ensembl Gene ID:
ENSAPLG00000016141
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031952
13136221 - 13145140
8920