Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13140807_13141116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13140807 - 13141116

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGAAC

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

CGTCCCTGATCT

Flanking Amino Acid:

FSEEKDPLWQDPCEDKRHKD

Intron Amino Acid Position:

579

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

38.2

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

0.65

0.9

75.9

Minor 5ss

31.2

-2.2

3.4

41.6

45.4

Minor BPS

53.4

0.18

1.8

71.48

44.7

Associated Gene:

Gene:

NDST1

Ensembl Gene ID:

ENSAPLG00000016141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031952

13136221 - 13145140

8920

ENSAPLT00000016866

13136221 - 13145140

8920