About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13162978_13163280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13162978 - 13163280
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATG
Flanking Amino Acid:
TFVHVTDLSGKETICRVTGG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
71.5
0.54
1.4
75.82
36

Associated Gene:

Gene:
RPS14
Ensembl Gene ID:
ENSAPLG00000013923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014501
13162827 - 13336293
173467