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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13163443_13163647_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13163443 - 13163647
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GAATCTTTAAGA
Flanking Amino Acid:
HIKLRATGGNRTKTPGPGAQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
85.5
0.8
0.7
77.2
31.5
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
62
0.37
1.6
66.2
39.9

Associated Gene:

Gene:
RPS14
Ensembl Gene ID:
ENSAPLG00000013923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014501
13162827 - 13336293
173467