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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13163725_13335069_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13163725 - 13335069
Intron Length:
171345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AGCACCTCAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGGAC
U12 Branch Point Sequence:
GGTATTTGGACT
Flanking Amino Acid:
ARSGMKIGRIDGGTPSPTLS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
61.5
0.29
1.4
63.1
44.5
Major PPT
48.9
-0
1.1
46.6
34.9
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
49.3
0.03
1.5
65.62
38.7

Associated Gene:

Gene:
RPS14
Ensembl Gene ID:
ENSAPLG00000013923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014501
13162827 - 13336293
173467